PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_DFE1721E0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 295aa    MW: 32232.5 Da    PI: 7.9282
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_DFE1721E0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.62.9e-19141202259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                            +D ++WrKYG K++  ++fpr YYrC ++   +Cp+kk v+++ ++dp ++ +t  ++H+++
  Traes_1DL_DFE1721E0.1 141 NDRFHWRKYGEKKILHADFPRLYYRCGYSdehKCPAKKYVQQQnSRDPPMFLVTLINDHTCD 202
                            79*************************998899*******875167*************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-20132202IPR003657WRKY domain
SuperFamilySSF1182902.62E-19135202IPR003657WRKY domain
PROSITE profilePS5081114.963135204IPR003657WRKY domain
SMARTSM007742.9E-27140203IPR003657WRKY domain
PfamPF031061.8E-20141202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
IFPNGDAAQV RDVAAAGAPV ALRPKRRCHR GAPEGLSACG VPPAAGGAHP GGQPXRRDAA  60
LANVSDITTA LASSLSVLQS EKEQYSSSSS SYDPGHASGP SGGGMRNGPV ARSRNRKAKH  120
RRGTYGEELP IKEILTEAPE NDRFHWRKYG EKKILHADFP RLYYRCGYSD EHKCPAKKYV  180
QQQNSRDPPM FLVTLINDHT CDTLFPDEDQ DQPPSSSSSP NNSQVLDFSK ASLSSAVGVS  240
RLKKEEDADM SVTVPSYNYT YDELSSSSLP FLSPKQWEME MEVKSLFRRH SGDGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114121NRKAKHRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233189.24e-91PREDICTED: WRKY transcription factor 55-like
TrEMBLW5AJ230.0W5AJ23_WHEAT; Uncharacterized protein
STRINGMLOC_11088.11e-142(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-17WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]